Miscellaneous

Scientific dissemination

Scientific communication

2019
Investigating host-microbiota cooperation with gap-filling optimization problems
Invited research team seminar Institute of Quantitative and Theoretical Biology, HHU , January 2019, Düsseldorf, Germany
Talk
2018
Investigating host-microbiota cooperation with gap-filling optimization problems
Invited research team seminar Bioinformatics research group, LRI , November 2018, Orsay, France
Talk
2018
Scalable and exhaustive screening of metabolic functions in microbiotas
Invited research team seminar Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile , November 2018, Santiago, Chile
Talk
2018
Scalable and exhaustive screening of metabolic functions in microbiotas
II Workshop on Systems Biology Chile-France, November 7th-9th 2018, Valparaiso, Chile
Talk
2018
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
XXIV Congreso Latinoamericano de Microbiologia, ALAM 2018, November 13th-16th 2018, Santiago, Chile
Poster
2018
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
European Conference on Computational Biology, ECCB 2018, September 8th-12th 2018, Athens, Greece
Talk - Slides
2018
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
European Conference on Computational Biology, ECCB 2018, September 8th-12th 2018, Athens, Greece
Poster - PDF
2018
Scalable and exhaustive screening of metabolic functions in microbiotas
Invited research team seminar UMR Nutriomics, ICAN , October 2018, Paris, France
Talk
2018
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
Journées scientifiques de Nantes 2018, June 2018, Nantes, France
Talk
2018
Combinatorial approaches for interactions prediction and community selection in holobionts.
Gen2Bio 2018, March 2018, Rennes, France
Poster
2018
Combining size and exchange minimization enables scalable screening of microbial consortia
Applied Bioinformatics in Life Sciences ABLS 2018, March 8th-9th 2018, Leuven, Belgium
Poster
2017
Toward the study of metabolic functions in algal-bacterial holobionts
4ème Colloque du GDR de Génomique Environnementale, September 13-15th 2017, Marseille
Talk
2017
Topology to elucidate the respective roles of species in a symbiotic community
International Conference on Holobionts, April 19th-21st 2017, Paris
Poster
2017
Hybrid gap-filling to reconcile qualitative and quantitative abstractions of metabolism
3ème édition des Journées annuelles du GDR BIOSS , March 13-14th 2017, Montpellier
Talk
2016
Combinatorial gap-filling for genome-scale metabolic networks using taxonomy and pathway information
École Jeunes Chercheurs CNRS – 3ème École thématique de modélisation formelle des réseaux de régulation biologique Bioregul, June 6th-10th, Porquerolles
Poster

Scientific popularizarion

2016
Une petite histoire de symbiose(s)
Very Short Films Festival Sciences en Court[s]
2nd jury prize
2016
Une petite histoire de symbiose(s)
Short Film Festival Bioinfuse
JOBIM 2016

Teaching and supervising

Teaching

2017-2018
Licence
ENSAI
Algorithmique et programmation, latex, suivi de projet Python, optimisation
2017-2018
Licence
Université de Rennes 1
Bureautique, programmation scientifique

Supervising

2019
Margot Wagner
Master 2 (6 months) Modélisation en écologie, Université de Rennes 1
Analysis of brown algae and microbiota's physiological response to varying growth conditions.
2018
Enora Fremy
Master 2 (6 months) Bio-Informatique et Génomique, Université de Rennes 1
In silico prediction of brown-algal bacterial interactions
2017
Claire Lippold
Master 1 (3 months) Bio-Informatique et Génomique, Université de Rennes 1
Exploration and characterization of the microbiome associated to Ectocarpus subulatus str. BFT