PhD | Computer Science — Computational biology
Junior researcher
Inria Bordeaux - France
Research interests
Systems biology
Bioinformatics
Microbial communities
Metabolic modelling
Combinatorial optimisation problems
Answer Set Programming
Gut microbiome
Marine biology
Latest publications
- Maxime Lecomte, Wenfan Cao, Julie Aubert, David J. Sherman, Hélène Falentin, Clémence Frioux, and Simon Labarthe. A digital twin of bacterial metabolism during cheese production. bioRxiv, 2023. http://doi.org/10.1101/2023.05.05.539417Clémence Frioux, Rebecca Ansorge, Ezgi Özkurt, Chabname Ghassemi Nedjad, Joachim Fritscher, Christopher Quince, Sebastian M. Waszak, and Falk Hildebrand. Enterosignatures define common bacterial guilds in the human gut microbiome. Cell Host & Microbe, 2023. http://doi.org/10.1016/j.chom.2023.05.024Arnaud Belcour, Jeanne Got, Méziane Aite, Ludovic Delage, Jonas Collén, Clémence Frioux, Catherine Leblanc, Simon M Dittami, Samuel Blanquart, Gabriel V Markov, and Anne Siegel. Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe. Genome Research, 2023. http://doi.org/10.1101/gr.277056.122Clémence Frioux, Sylvie Huet, Simon Labarthe, Julien Martinelli, Thibault Malou, David Sherman, Marie-Luce Taupin, and Pablo Ugalde-Salas. Accelerating metabolic models evaluation with statistical metamodels: application to Salmonella infection models. In: ESAIM: Proceedings and Surveys, pp. 187–217 2023. http://doi.org/10.1051/proc/202373187Arnaud Belcour, Baptiste Ruiz, Clémence Frioux, Samuel Blanquart, and Anne Siegel. EsMeCaTa: Estimating metabolic capabilities from taxonomic affiliations. bioRxiv, 2022. http://doi.org/10.1101/2022.03.16.484574Hetty KleinJan, Clémence Frioux, Gianmaria Califano, Méziane Aite, Enora Fremy, Elham Karimi, Erwan Corre, Thomas Wichard, Anne Siegel, Catherine Boyen, and Simon M. Dittami. Insights into the potential for mutualistic and harmful host‐microbe interactions affecting brown alga freshwater acclimation. Molecular Ecology, 2022. http://doi.org/10.1111/mec.16766Paola Fournier, Lucile Pellan, Didac Barroso-Bergadà, David A. Bohan, Thierry Candresse, François Delmotte, Marie-Cécile Dufour, Virginie Lauvergeat, Claire Le Marrec, Armelle Marais, Guilherme Martins, Isabelle Masneuf-Pomarède, Patrice Rey, David Sherman, Patrice This, Clémence Frioux, Simon Labarthe, and Corinne Vacher. The functional microbiome of grapevine throughout plant evolutionary history and lifetime. Advances in Ecological Research, 2022. http://doi.org/10.1016/bs.aecr.2022.09.001Clémence Frioux and Anne Siegel. Problèmes d’optimisation combinatoire pour l’étude du métabolisme. In: Editions, I.S.T.E. (ed.) Approches symboliques de la modélisation et de l’analyse des systèmes biologiques, pp. 51–96, ISTE Group, 2022.